Here’s a simple script for interleaving paired-end fastq files. You’ll need to do this if you want to create input files for velvet. Unlike the velvet’s shuffleSequences_fastq.pl¬†perl script, this script handles gzipped input and output. It requires python 2.7.

Tagged with →  
Share →

Leave a Reply

Your email address will not be published. Required fields are marked *

You may use these HTML tags and attributes: <a href="" title=""> <abbr title=""> <acronym title=""> <b> <blockquote cite=""> <cite> <code> <del datetime=""> <em> <i> <q cite=""> <strike> <strong> <pre lang="" line="" escaped="" cssfile="">