Here’s a simple script for interleaving paired-end fastq files. You’ll need to do this if you want to create input files for velvet. ┬áIt requires python 2.7.

Tagged with →  
Share →

2 Responses to Python: Interleave Paired-End Reads

  1. Tommy says:

    Where is the part where you handle gzipped input?

Leave a Reply

Your email address will not be published. Required fields are marked *

You may use these HTML tags and attributes: <a href="" title=""> <abbr title=""> <acronym title=""> <b> <blockquote cite=""> <cite> <code> <del datetime=""> <em> <i> <q cite=""> <strike> <strong> <pre lang="" line="" escaped="" cssfile="">