19Jan/09Off
BI206 Discussion Sections: Spring 2009
Note: This post will always appear at the top of the blog entries. Although this makes it easier for you [my lovely students] to access general course information, you make need scroll down to see the most recent entries!
I'm teaching the following sections:
- Section B2: Monday from 12:00 to 1:00 pm
- Section B4: Monday from 2:00 to 3:00 pm
- Section C1: Tuesday from 8:00 to 9:00 am
Course Policies: (note: I retain the right to update this as needed)
The course syllabus distributed by Dr. Celenza on the course website has the final word and should be treated as such. The following points are merely clarifications.
- Absences: If you are going to miss a class you need to email me prior to your absence. You will need to have legitimate excuse.
- Late work: Homework is due in class each week. If you cannot complete the homework on time, you should let me know in advance. It is always in your best interest to pass in an assignment late than one that is incomplete. However, homework more than a week late will not be graded and I do not accept homework via email. I am reasonably understanding when it comes to the busy lives of college students.
- Make-up assignments: There will be a "lowest quiz make up assignment." You should not plan to do this assignment if all your quiz grades are greater than ~ 65% as it will be graded rigorously.
OOE: Another blog I help write
- From Tophat to Pysam July 21, 2010I recently needed to interact with a SAM file in python that was created as part of a Tophat run. Rather rolling my own parser I decided to use the handy pysam module. However, I immediately ran into trouble. I couldn’t get pysam to open my file. It turns out pysam requires a BAM file not a SAM file. This meant I need to convert filetypes. So, I fired up sa […]
- Inferring Heterozygosity from SNP data April 20, 2010This looks straightforward. n = total number of reads aligning to a base y = total number of reads aligning to a base that match the reference p = probability that reads match the reference base Bases with LOD>3 were called SNPs or sites of heterozygosity. From Bloom et al. (2009) Measuring differential gene expression by short read sequencing: quantitat […]
- Why we are "Python Fanboys" April 15, 2010I think I can safely say that we’re all Python evangelists. In fact, I’m pretty sure my first conversation with ‘FixedByDrift’ revolved around just how enamored with Python he is. Likewise my first email with ‘AmbiguousBase’ was a code exchange of microsatellite finding software written in Python. We just love Python. So why should you learn to love Python […]
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